Second slice of Issues + Systems (spec #825).
New mcp/tools/systems.py: create_system, list_systems, get_system (records
split into issues/tasks/notes), update_system (incl. archive via status),
list_system_records (kind/open_only filters), delete_system. Registered in
register_all; read tools (get_system, list_systems, list_system_records) added
to the read-only-key allowlist (write tools default-deny).
create_task/update_task: kind now accepts 'issue'; new system_ids (set-semantics
associations) and arose_from_id (provenance, 0=unchanged/-1=clear) args.
create_note/update_note: new system_ids arg (notes associate with systems too).
services/notes.create_note: arose_from_id passthrough (update_note already
handles it via setattr).
Tests: MCP system tools + create_task issue-wiring (kind/provenance/systems),
service layer mocked.
Refs plan 825 (S2).
Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
bvandeusen
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