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On 2026-09-19 a host storage stall made one Postgres checkpoint of 14 buffers take 281 seconds against a 1.3-second baseline. The app restarted into the tail of it, `get_maintenance_hour()` — the first DB read in `before_serving` — hung with no deadline, Hypercorn killed the worker at its 60-second lifespan timeout, and nothing retries a failed lifespan. A five-minute disk hiccup became a three-hour outage that only a human restart could clear. Every MCP call returned 405, which reads like a routing fault and was nothing of the kind: nothing was serving. Three changes, none of which prevent a stall — they stop a transient one becoming a permanent one. 1. THE STARTUP READ IS BOUNDED (rule 156). `get_maintenance_hour` already answered `_DEFAULT_HOUR` for a value it could not parse; a database that will not answer in three seconds is the same class of "no usable value here". The failure is now a WARNING naming the symptom — the breadcrumb whose absence meant this was only diagnosable from Postgres's own log — and a default run-hour, instead of the app. 2. THE BACKFILL NO LONGER RACES STARTUP. Its comment said it "never blocks the server from accepting requests": true of requests, false of startup, because the task began while `before_serving` was still running and competed for the same pool. Both of the incident's cancelled statements were in flight together. It now waits on a flag released on the hook's way out — in a `finally`, never after the work (rule 157), because an undeadlined wait is only safe when the wake-up cannot be missed. 3. THE ENGINE CANNOT WAIT FOREVER TO CONNECT. asyncpg's default is 60s, the whole lifespan budget spent before a query is sent. `command_timeout` is deliberately NOT set alongside it and the comment says why: it would apply to every statement, and this app runs long ones on purpose. tests/test_startup_survives_a_slow_database.py asserts the shape rather than the stall: a read that never returns still yields an hour, the warning names the symptom, a healthy read is unaffected, the backfill does no work before release, the flag is released even when startup raises, and the engine's connect args carry a deadline but no blanket statement timeout. Co-Authored-By: Claude Opus 5 <noreply@anthropic.com> Claude-Session: https://claude.ai/code/session_01821k5B3Ysecp9fNYs92Kuy
363 lines
16 KiB
Python
363 lines
16 KiB
Python
import logging
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import time
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import traceback as tb_module
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from pathlib import Path
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from quart import Quart, g, jsonify, make_response, request, send_from_directory
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from scribe.config import Config
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from scribe.routes.admin import admin_bp
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from scribe.routes.api import api
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from scribe.routes.auth import auth_bp
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from scribe.routes.export import export_bp
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from scribe.routes.notes import notes_bp
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from scribe.routes.milestones import milestones_bp
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from scribe.routes.task_logs import task_logs_bp
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from scribe.routes.projects import projects_bp
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from scribe.routes.retrieval import retrieval_bp
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from scribe.routes.settings import settings_bp
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from scribe.routes.tasks import tasks_bp
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from scribe.routes.groups import groups_bp
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from scribe.routes.shares import shares_bp
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from scribe.routes.in_app_notifications import notifications_bp
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from scribe.routes.users import users_bp
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from scribe.routes.api_keys import api_keys_bp
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from scribe.routes.search import search_bp
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from scribe.routes.profile import profile_bp
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from scribe.routes.knowledge import knowledge_bp
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from scribe.routes.rulebooks import rulebooks_bp
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from scribe.routes.plugin import plugin_bp
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from scribe.routes.design_systems import design_systems_bp
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from scribe.routes.trash import trash_bp
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from scribe.routes.dashboard import dashboard_bp
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from scribe.routes.systems import systems_bp
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from scribe.routes.canonical_systems import canonical_systems_bp
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from scribe.routes.snippets import snippets_bp
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from scribe.routes.webhooks import webhooks_bp
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from scribe.mcp import mount_mcp
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STATIC_DIR = Path(__file__).parent / "static"
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logger = logging.getLogger(__name__)
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def create_app() -> Quart:
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# Configure logging
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logging.basicConfig(
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format="%(asctime)s [%(levelname)s] %(name)s: %(message)s",
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level=getattr(logging, Config.LOG_LEVEL.upper(), logging.INFO),
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)
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# Validate config early so misconfigurations surface immediately with clear messages
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try:
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Config.validate()
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except ValueError as exc:
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logging.getLogger(__name__).error("Invalid configuration:\n%s", exc)
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raise
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app = Quart(__name__, static_folder=None)
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app.secret_key = Config.SECRET_KEY
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app.config["SESSION_COOKIE_HTTPONLY"] = True
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app.config["SESSION_COOKIE_SAMESITE"] = "Lax"
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app.config["SESSION_COOKIE_SECURE"] = Config.SECURE_COOKIES
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if Config.SECRET_KEY == "dev-secret-change-me":
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logger.warning(
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"SECRET_KEY is set to the default value — session cookies are insecure. "
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"Set SECRET_KEY or SECRET_KEY_FILE for production use."
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)
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if not Config.TRUST_PROXY_HEADERS:
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logger.warning(
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"TRUST_PROXY_HEADERS is not set. If this instance is behind a reverse proxy "
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"(nginx, Caddy, Traefik) set TRUST_PROXY_HEADERS=true so rate limiting uses "
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"real client IPs rather than the proxy IP."
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)
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app.register_blueprint(admin_bp)
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app.register_blueprint(api)
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app.register_blueprint(auth_bp)
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app.register_blueprint(export_bp)
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app.register_blueprint(milestones_bp)
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app.register_blueprint(notes_bp)
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app.register_blueprint(projects_bp)
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app.register_blueprint(retrieval_bp)
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app.register_blueprint(settings_bp)
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app.register_blueprint(task_logs_bp)
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app.register_blueprint(tasks_bp)
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app.register_blueprint(groups_bp)
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app.register_blueprint(shares_bp)
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app.register_blueprint(notifications_bp)
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app.register_blueprint(users_bp)
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app.register_blueprint(api_keys_bp)
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app.register_blueprint(search_bp)
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app.register_blueprint(profile_bp)
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app.register_blueprint(knowledge_bp)
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app.register_blueprint(rulebooks_bp)
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app.register_blueprint(plugin_bp)
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app.register_blueprint(design_systems_bp)
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app.register_blueprint(trash_bp)
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app.register_blueprint(dashboard_bp)
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app.register_blueprint(systems_bp)
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app.register_blueprint(canonical_systems_bp)
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app.register_blueprint(snippets_bp)
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app.register_blueprint(webhooks_bp)
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@app.before_request
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async def before_request():
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g.request_start = time.monotonic()
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@app.after_request
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async def after_request(response):
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duration = time.monotonic() - getattr(g, "request_start", time.monotonic())
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duration_ms = round(duration * 1000, 1)
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# Downgrade noisy high-frequency / static paths to DEBUG
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_quiet = (
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request.path in {"/api/health", "/api/chat/status"}
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or request.path.startswith(("/static/", "/assets/", "/sw.js", "/manifest.json"))
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)
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log_fn = logger.debug if _quiet else logger.info
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log_fn(
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"%s %s %s %.1fms",
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request.method,
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request.path,
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response.status_code,
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duration_ms,
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)
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# Log usage for API requests (skip logs endpoint to avoid recursion)
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if request.path.startswith("/api/") and not request.path.startswith("/api/admin/logs"):
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try:
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from scribe.services.logging import log_usage
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user = getattr(g, "user", None)
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await log_usage(
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user_id=user.id if user else None,
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username=user.username if user else None,
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endpoint=request.path,
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method=request.method,
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status_code=response.status_code,
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duration_ms=duration_ms,
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)
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except Exception:
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logger.debug("Failed to log usage", exc_info=True)
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response.headers.setdefault("X-Content-Type-Options", "nosniff")
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response.headers.setdefault("X-Frame-Options", "DENY")
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response.headers.setdefault("Referrer-Policy", "strict-origin-when-cross-origin")
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response.headers.setdefault(
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"Content-Security-Policy",
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"default-src 'self'; "
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"script-src 'self' 'unsafe-inline' 'wasm-unsafe-eval'; "
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"style-src 'self' 'unsafe-inline' https://fonts.googleapis.com; "
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"img-src 'self' data: blob:; "
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"connect-src 'self'; "
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"font-src 'self' data: https://fonts.gstatic.com; "
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"object-src 'none'; "
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"base-uri 'self'; worker-src 'self' blob:;"
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)
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return response
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@app.before_serving
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async def startup():
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import asyncio
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# Set on the last line of this hook; the deferred backfill below waits
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# on it. An Event rather than a bare bool so the waiter is woken
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# instead of polling, and declared here — inside the hook, where
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# `asyncio` is in scope and a running loop exists — rather than in
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# `create_app`, which runs before either is true.
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_startup_finished = asyncio.Event()
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from scribe.services.auth import start_auth_token_retention_loop
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from scribe.services.embeddings import (
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backfill_milestone_embeddings, backfill_note_embeddings, backfill_rule_embeddings,
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)
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from scribe.services.logging import start_log_retention_loop
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from scribe.services.notifications import start_notification_loop
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start_log_retention_loop()
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start_notification_loop()
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start_auth_token_retention_loop()
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# Backfill embeddings for any notes that don't have one. Runs in the
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# background so it never blocks the server from accepting requests —
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# and, since #4181, not until the rest of this hook has finished.
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#
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# "Background" was true of REQUESTS and false of STARTUP. A task
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# created here begins immediately, while `before_serving` is still
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# running, so its four passes competed with the startup hook's own
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# database reads for the same connection pool. That is survivable on a
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# healthy disk and fatal on a sick one: on 2026-09-19 both this
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# backfill's first query and the hook's maintenance-hour read were
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# cancelled together when Hypercorn killed the worker at its lifespan
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# timeout, and the instance stayed down for three hours.
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#
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# The wait is on the SERVING FLAG rather than a sleep, because a sleep
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# would be a guess about how long the rest of the hook takes and would
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# be wrong in exactly the conditions that matter.
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async def _delayed_backfill() -> None:
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await _startup_finished.wait()
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try:
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await backfill_note_embeddings()
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except Exception:
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logger.warning("Embedding backfill failed", exc_info=True)
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# Rules got vectors in milestone 307; every rule written before it
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# has none, so this is the pass that makes them findable at all.
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try:
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await backfill_rule_embeddings()
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except Exception:
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logger.warning("Rule embedding backfill failed", exc_info=True)
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# Milestones got vectors in milestone 415, so a plan written before
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# it is findable only after this pass.
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try:
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await backfill_milestone_embeddings()
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except Exception:
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logger.warning("Milestone embedding backfill failed", exc_info=True)
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# Snippets written before migration 0070 have no `notes.data` mirror,
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# and the location reverse lookup queries that column — an unfilled
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# row would read as "no snippet here" rather than as a gap. Separate
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# try block so neither backfill can skip the other.
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try:
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from scribe.services.snippets import backfill_snippet_data
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await backfill_snippet_data()
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except Exception:
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logger.warning("Snippet data backfill failed", exc_info=True)
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# Created here but gated on the flag released at the END of this hook,
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# so the task exists (nothing can forget to start it) while none of its
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# work overlaps startup's own.
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asyncio.create_task(_delayed_backfill())
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# RELEASED IN A `finally`, never after the work (rules 156 and 157).
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# The waiter above has no deadline of its own, and the way to make an
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# undeadlined wait safe is to make the release unmissable: if anything
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# below raises, the flag is still set and the task ends instead of
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# living on as a coroutine nobody will ever wake.
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try:
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# Recurrence scheduler (recurring-task spawn every 15m)
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from scribe.services.recurrence_scheduler import start_recurrence_scheduler
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start_recurrence_scheduler(asyncio.get_running_loop())
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# Version-pinning scheduler (daily auto-pin scan at 03:00 UTC)
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from scribe.services.version_pinning_scheduler import (
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start_version_pinning_scheduler,
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)
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start_version_pinning_scheduler(asyncio.get_running_loop())
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# Trash retention scheduler (daily expired-trash purge at 03:30 UTC)
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from scribe.services.trash_scheduler import start_trash_scheduler
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start_trash_scheduler(asyncio.get_running_loop())
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# DB maintenance scheduler (daily targeted VACUUM ANALYZE, default
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# 04:00 UTC). `get_maintenance_hour` is the FIRST database read in
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# this hook and is bounded for that reason (#4181) — see the long
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# comment above `_STARTUP_READ_TIMEOUT`. Anything added here that
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# touches the database needs the same treatment: a lifespan hook
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# that does not return is a worker that never serves.
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from scribe.services.db_maintenance_scheduler import (
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get_maintenance_hour,
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start_db_maintenance_scheduler,
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)
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start_db_maintenance_scheduler(
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asyncio.get_running_loop(), await get_maintenance_hour()
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)
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# Diagnostic instrumentation — heartbeat, signal handlers, asyncio
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# exception hook. Cheap (~1 log line/min), high diagnostic value when
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# the app crashes mysteriously. See services/diagnostics.py.
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from scribe.services.diagnostics import start_diagnostics
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start_diagnostics(asyncio.get_running_loop())
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finally:
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# STARTUP IS OVER — release the backfill (#4181). Everything above
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# is work the server needs done before it serves; everything the
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# backfill does is work that can wait for a server already up.
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logger.info("Startup complete; releasing deferred backfill")
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_startup_finished.set()
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@app.after_serving
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async def shutdown():
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from scribe.services.recurrence_scheduler import stop_recurrence_scheduler
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stop_recurrence_scheduler()
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from scribe.services.version_pinning_scheduler import (
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stop_version_pinning_scheduler,
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)
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stop_version_pinning_scheduler()
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from scribe.services.trash_scheduler import stop_trash_scheduler
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stop_trash_scheduler()
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from scribe.services.db_maintenance_scheduler import (
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stop_db_maintenance_scheduler,
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)
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stop_db_maintenance_scheduler()
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from scribe.services.diagnostics import stop_diagnostics
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stop_diagnostics()
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@app.route("/")
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async def serve_index():
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resp = await make_response(
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await send_from_directory(STATIC_DIR, "index.html")
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)
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resp.headers["Cache-Control"] = "no-cache, no-store, must-revalidate"
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return resp
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# File extensions that belong to the SPA or its assets.
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# Anything else with an extension is not a valid app path and gets a hard 404.
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_SPA_EXTENSIONS = {
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"", ".html", ".js", ".css", ".ico", ".png", ".jpg", ".jpeg",
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".svg", ".webp", ".woff", ".woff2", ".ttf", ".otf", ".map", ".json",
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}
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@app.errorhandler(404)
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async def handle_404(error):
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# Return JSON 404 for API routes
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if request.path.startswith("/api/"):
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return jsonify({"error": "Not found"}), 404
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# Try to serve a real static file first
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path = request.path.lstrip("/")
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file_path = STATIC_DIR / path
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if path and file_path.is_file():
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return await send_from_directory(STATIC_DIR, path)
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# Reject paths with file extensions the app doesn't serve.
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# This turns scanner probes (.php, .asp, .cgi, etc.) into honest 404s
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# instead of serving them the Vue SPA with a misleading 200.
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from pathlib import PurePosixPath
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suffix = PurePosixPath(request.path).suffix.lower()
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if suffix not in _SPA_EXTENSIONS:
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return "", 404
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# SPA fallback for clean client-side routes (/notes/123, /chat, etc.)
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resp = await make_response(
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await send_from_directory(STATIC_DIR, "index.html")
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)
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resp.headers["Cache-Control"] = "no-cache, no-store, must-revalidate"
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return resp
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@app.errorhandler(500)
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async def handle_500(error):
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logger.exception("Internal server error on %s %s", request.method, request.path)
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try:
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from scribe.services.logging import log_error
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user = getattr(g, "user", None)
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await log_error(
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user_id=user.id if user else None,
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username=user.username if user else None,
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endpoint=request.path,
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method=request.method,
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error_type=type(error).__name__,
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error_message=str(error),
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traceback=tb_module.format_exc(),
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)
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except Exception:
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logger.debug("Failed to log error", exc_info=True)
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if request.path.startswith("/api/"):
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return jsonify({"error": "Internal server error"}), 500
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return "Internal Server Error", 500
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mount_mcp(app)
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return app
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