feat(trash): exclude trashed rows from events/projects/milestones/rulebooks/embeddings reads + filtering tests

src/fabledassistant/services/milestones.py

@@ -37,7 +37,10 @@ async def create_milestone(
 async def get_milestone(user_id: int, milestone_id: int) -> Milestone | None:
     async with async_session() as session:
         result = await session.execute(
-            select(Milestone).where(Milestone.id == milestone_id, Milestone.user_id == user_id)
+            select(Milestone).where(
+                Milestone.id == milestone_id, Milestone.user_id == user_id,
+                Milestone.deleted_at.is_(None),
+            )
         )
         return result.scalars().first()
 
@@ -93,6 +96,7 @@ async def list_milestones(
         query = select(Milestone).where(
             Milestone.user_id == user_id,
             Milestone.project_id == project_id,
+            Milestone.deleted_at.is_(None),
         )
         if status:
             query = query.where(Milestone.status == status)
@@ -136,7 +140,10 @@ async def get_milestone_progress(milestone_id: int) -> dict:
     async with async_session() as session:
         rows = await session.execute(
             select(Note.status, func.count(Note.id))
-            .where(Note.milestone_id == milestone_id, Note.status.isnot(None))
+            .where(
+                Note.milestone_id == milestone_id, Note.status.isnot(None),
+                Note.deleted_at.is_(None),
+            )
             .group_by(Note.status)
         )
         status_counts: dict[str, int] = {}