feat(issues): S2 MCP tools — system CRUD + issue/system wiring

Second slice of Issues + Systems (spec #825).

New mcp/tools/systems.py: create_system, list_systems, get_system (records
split into issues/tasks/notes), update_system (incl. archive via status),
list_system_records (kind/open_only filters), delete_system. Registered in
register_all; read tools (get_system, list_systems, list_system_records) added
to the read-only-key allowlist (write tools default-deny).

create_task/update_task: kind now accepts 'issue'; new system_ids (set-semantics
associations) and arose_from_id (provenance, 0=unchanged/-1=clear) args.
create_note/update_note: new system_ids arg (notes associate with systems too).
services/notes.create_note: arose_from_id passthrough (update_note already
handles it via setattr).

Tests: MCP system tools + create_task issue-wiring (kind/provenance/systems),
service layer mocked.

Refs plan 825 (S2).

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

src/scribe/mcp/tools/__init__.py

@@ -5,7 +5,7 @@ to a FastMCP instance. `register_all(mcp)` is the single entry point called
 from `mcp.server.build_mcp_server`.
 """
 from scribe.mcp.tools import (
-    entities, events, milestones, notes, processes, projects, recent, repos, rulebooks, search, tags, tasks, trash,
+    entities, events, milestones, notes, processes, projects, recent, repos, rulebooks, search, systems, tags, tasks, trash,
 )
 
 
@@ -16,6 +16,7 @@ def register_all(mcp) -> None:
     tasks.register(mcp)
     projects.register(mcp)
     milestones.register(mcp)
+    systems.register(mcp)
     events.register(mcp)
     tags.register(mcp)
     recent.register(mcp)