feat(search): pgvector substrate — vector(384) + HNSW for semantic search

Move semantic_search_notes off the full-table Python cosine scan onto a native
pgvector column: indexed ORDER BY embedding <=> :q LIMIT k (HNSW, cosine).
Migration 0067 enables the extension, converts the JSONB embedding column to
vector(384) (stale-dim rows dropped and regenerated by the startup backfill),
and builds the HNSW cosine index. Postgres image moves postgres:16-alpine ->
pgvector/pgvector:pg17 across prod, quickstart, and CI.

Scribe: project 2, milestone 93, task 1031.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01Xz4j1H7pjYSjKsEpgcNH5E
This commit is contained in:
2026-06-22 20:10:15 -04:00
parent 5fbee18a94
commit 513019786e
8 changed files with 217 additions and 26 deletions
@@ -0,0 +1,73 @@
"""pgvector: note_embeddings.embedding JSONB -> vector(384) + HNSW index
Revision ID: 0067
Revises: 0066
Create Date: 2026-06-22
Moves semantic search off the full-table Python cosine scan onto a native
pgvector column so ranking + top-k run as an indexed `ORDER BY embedding <=> :q
LIMIT k` in Postgres (see services/embeddings.semantic_search_notes).
Requires a Postgres image that bundles the `vector` extension — the stack moved
from postgres:16-alpine to pgvector/pgvector:pg16 in the same change (compose +
CI). `CREATE EXTENSION IF NOT EXISTS vector` below is the in-db half.
Embeddings are DERIVED data (regenerated from note text by
backfill_note_embeddings at startup), so this migration is free to drop any row
it can't cleanly convert: only rows whose stored JSONB array is exactly 384-dim
are carried over (guarding against stale vectors from an earlier model — the
same mixed-dim hazard _cosine_similarity defended against). Dropped rows are
re-embedded on next boot.
"""
from alembic import op
revision = "0067"
down_revision = "0066"
branch_labels = None
depends_on = None
def upgrade() -> None:
op.execute("CREATE EXTENSION IF NOT EXISTS vector")
# New native-vector column, populated only from cleanly-convertible rows.
# A JSONB array like [0.1, 0.2, ...] renders to text that is exactly
# pgvector's input literal, so (embedding::text)::vector is a direct cast.
op.execute("ALTER TABLE note_embeddings ADD COLUMN embedding_vec vector(384)")
op.execute(
"""
UPDATE note_embeddings
SET embedding_vec = (embedding::text)::vector
WHERE jsonb_array_length(embedding) = 384
"""
)
# Stale-dim rows (couldn't convert) are derived data — drop and let the
# startup backfill regenerate them at the current dimension.
op.execute("DELETE FROM note_embeddings WHERE embedding_vec IS NULL")
op.execute("ALTER TABLE note_embeddings ALTER COLUMN embedding_vec SET NOT NULL")
op.execute("ALTER TABLE note_embeddings DROP COLUMN embedding")
op.execute("ALTER TABLE note_embeddings RENAME COLUMN embedding_vec TO embedding")
# HNSW index for cosine distance — matches Vector.cosine_distance (`<=>`).
op.execute(
"""
CREATE INDEX ix_note_embeddings_embedding_hnsw
ON note_embeddings
USING hnsw (embedding vector_cosine_ops)
"""
)
def downgrade() -> None:
# Back to JSONB. pgvector renders a vector to a text literal that is a valid
# JSON array, so the reverse cast is symmetric. The `vector` extension is
# intentionally left installed (other objects may depend on it; dropping an
# extension is the riskier, rarely-wanted direction).
op.execute("DROP INDEX IF EXISTS ix_note_embeddings_embedding_hnsw")
op.execute("ALTER TABLE note_embeddings ADD COLUMN embedding_json jsonb")
op.execute("UPDATE note_embeddings SET embedding_json = (embedding::text)::jsonb")
op.execute("ALTER TABLE note_embeddings ALTER COLUMN embedding_json SET NOT NULL")
op.execute("ALTER TABLE note_embeddings DROP COLUMN embedding")
op.execute("ALTER TABLE note_embeddings RENAME COLUMN embedding_json TO embedding")